A comparison of genetic structure in two low-dispersal crabs from the Wild Coast, South Africa
- Authors: Qhaji, Y , Jansen van Vuuren, Bettine , Papadopoulos, Isabelle , McQuaid, Christopher D , Teske, Peter R
- Date: 2015
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444770 , vital:74297 , https://doi.org/10.2989/1814232X.2015.1077474
- Description: The Wild Coast in south-eastern South Africa is strongly influenced by the warm, southward-flowing Agulhas Current. This current has a significant impact on dispersal in the coastal biota of the region, and facilitates high levels of connectivity among populations. However, it is not known how the region's high-velocity hydrology affects genetic population structure in endemic estuarine species, populations of which are frequently isolated from the sea. Here, we compared genetic structure in two estuarine crabs of the family Hymenosomatidae. Both are presumed to have low dispersal potential, but they differ in terms of their life histories. Hymenosoma longicrure has abbreviated larval development and can complete its entire life cycle within estuaries, whereas Neorhynchoplax bovis is a direct developer that lacks planktonic larvae.
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- Date Issued: 2015
Mitonuclear discordance in genetic structure across the Atlantic/Indian Ocean biogeographical transition zone
- Authors: Teske, Peter R , Papadopoulos, Isabelle , Barker, Nigel P , McQuaid, Christopher D , Beheregaray, Luciano B
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444832 , vital:74301 , https://doi.org/10.1111/jbi.1220
- Description: Based on mitochondrial DNA (mtDNA) data, many organisms with ranges spanning multiple biogeographical regions exhibit genetic structure across the transition zones between these regions, while others appear to be genetically homogenous. No clear link has been found between the presence or absence of such spatial genetic discontinuities and species' dispersal potential, confounding the formulation of general predictions concerning genetic structure. The fact that discrepancies between mtDNA and nuclear markers are common across semi‐permeable barriers suggests that a lack of structure could be attributable to mtDNA‐specific properties of inheritance. We re‐examined genetic structure in the coastal crab Hymenosoma orbiculare, a species that is represented by a single mtDNA lineage across the Atlantic/Indian Ocean biogeographical transition zone, by comparing mtDNA data with nuclear DNA data.
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- Date Issued: 2014
Dispersal barriers and stochastic reproductive success do not explain small-scale genetic structure in a broadcast spawning marine mussel
- Authors: Teske, Peter R , Papadopoulos, Isabelle , Barker, Nigel P , McQuaid, Christopher D
- Date: 2013
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/445577 , vital:74403 , https://doi.org/10.3354/meps10230
- Description: Small-scale genetic heterogeneity in marine broadcast spawners is often attributed either to physical factors that constrain larval dispersal or to stochasticity in reproductive success. In females of the mussel Perna perna, it has been attributed to asymmetrical levels of gene flow between bays and the open coast, with bays acting as sources of propagules. If nearshore currents are an important feature constraining dispersal, then genetic heterogeneity should also be identified in other coastal invertebrates with similar dispersal potential, and the amount of genetic structure in adults and juveniles should be similar, whereas temporal changes in reproductive success should manifest themselves in lower genetic diversity of juveniles. We compared sequence data of female P. perna with that of males, juveniles and 3 sympatric marine invertebrates. Congruent genetic structure was only found in a direct developer, suggesting that the region’s oceanography does not have a strong structuring effect on species that, like female P. perna, have a planktonic dispersal phase. Furthermore, lack of genetic structure in male and juvenile P. perna indicates that there are no physical barriers that reduce larval exchange. Stochastic reproductive success is also an unlikely explanation for genetic structure in P. perna because levels of genetic diversity are similar in adults and juveniles. Together with the recent finding that the sex ratio in P. perna is skewed toward males, particularly at exposed coastal sites, these results point to a role for selection in driving genetic structure between bays and coastal habitats by eliminating a large proportion of adult females from the open coast.
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- Date Issued: 2013
Mitochondrial DNA paradox: sex-specific genetic structure in a marine mussel despite maternal inheritance and passive dispersal
- Authors: Teske, Peter R , Papadopoulos, Isabelle , Barker, Nigel P , McQuaid, Christopher D
- Date: 2012
- Language: English
- Type: Article
- Identifier: vital:6836 , http://hdl.handle.net/10962/d1010959
- Description: Background: When genetic structure is identified using mitochondrial DNA (mtDNA), but no structure is identified using biparentally-inherited nuclear DNA, the discordance is often attributed to differences in dispersal potential between the sexes. Results: We sampled the intertidal rocky shore mussel Perna perna in a South African bay and along the nearby open coast, and sequenced maternally-inherited mtDNA (there is no evidence for paternally-inherited mtDNA in this species) and a biparentally-inherited marker. By treating males and females as different populations, we identified significant genetic structure on the basis of mtDNA data in the females only. Conclusions: This is the first study to report sex-specific differences in genetic structure based on matrilineally-inherited mtDNA in a passively dispersing species that lacks social structure or sexual dimorphism. The observed pattern most likely stems from females being more vulnerable to selection in habitats from which they did not originate, which also manifests itself in a male-biased sex ratio. Our results have three important implications for the interpretation of population genetic data. First, even when mtDNA is inherited exclusively in the female line, it also contains information about males. For that reason, using it to identify sex-specific differences in genetic structure by contrasting it with biparentally-inherited markers is problematic. Second, the fact that sex-specific differences were found in a passively dispersing species in which sex-biased dispersal is unlikely highlights the fact that significant genetic structure is not necessarily a function of low dispersal potential or physical barriers. Third, even though mtDNA is typically used to study historical demographic processes, it also contains information about contemporary processes. Higher survival rates of males in non-native habitats can erase the genetic structure present in their mothers within a single generation.
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- Date Issued: 2012
Climate‐driven genetic divergence of limpets with different life histories across a southeast African marine biogeographic disjunction: different processes, same outcome
- Authors: Teske, Peter R , Papadopoulos, Isabelle , Mmonwa, Kolobe L , Matumba, Tshifhiwa G , McQuaid, Christopher D , Barker, Nigel P , Beheregaray, Luciano B
- Date: 2011
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/445420 , vital:74385 , https://doi.org/10.1111/j.1365-294X.2011.05307.x
- Description: Genetic divergence among populations of marine broadcast spawners in the absence of past geological barriers presents an intriguing challenge to understanding speciation in the sea. To determine how differences in life history affect genetic divergence and demographic histories across incomplete dispersal barriers, we conducted a comparative phylogeographic study of three intertidal limpets (Siphonaria spp.) represented on either side of a biogeographic disjunction separating tropical and subtropical marine provinces in southeastern Africa. Using a combination of mitochondrial and nuclear sequence data, we identified two distinct evolutionary lineages each in both Siphonaria concinna (a planktonic disperser) and S. nigerrima (a direct developer), and panmixia in a second planktonic disperser, S. capensis.
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- Date Issued: 2011
Tri-locus sequence data reject a Gondwanan origin hypothesis for the African/South Pacific crab genus Hymenosoma
- Authors: Teske, Peter R , McLay, Colin L , Sandoval-Castillo, Jonathan , Papadopoulos, Isabelle , Newman, Brent K , Griffiths, Charles L , McQuaid, Christopher D , Barker, Nigel P , Borgonie, Gaetan , Beheregaray, Luciano B
- Date: 2009
- Language: English
- Type: Article
- Identifier: vital:6547 , http://hdl.handle.net/10962/d1006003
- Description: Crabs of the family Hymenosomatidae are common in coastal and shelf regions throughout much of the southern hemisphere. One of the genera in the family, Hymenosoma, is represented in Africa and the South Pacific (Australia and New Zealand). This distribution can be explained either by vicariance (presence of the genus on the Gondwanan supercontinent and divergence following its break-up) or more recent transoceanic dispersal from one region to the other. We tested these hypotheses by reconstructing phylogenetic relationships among the seven presently-accepted species in the genus, as well as examining their placement among other hymenosomatid crabs, using sequence data from two nuclear markers (Adenine Nucleotide Transporter [ANT] exon 2 and 18S rDNA) and three mitochondrial markers (COI, 12S and 16S rDNA). The five southern African representatives of the genus were recovered as a monophyletic lineage, and another southern African species, Neorhynchoplax bovis, was identified as their sister taxon. The two species of Hymenosoma from the South Pacific neither clustered with their African congeners, nor with each other, and should therefore both be placed into different genera. Molecular dating supports a post-Gondwanan origin of the Hymenosomatidae. While long-distance dispersal cannot be ruled out to explain the presence of the family Hymenosomatidae on the former Gondwanan land-masses and beyond, the evolutionary history of the African species of Hymenosoma indicates that a third means of speciation may be important in this group: gradual along-coast dispersal from tropical towards temperate regions, with range expansions into formerly inhospitable habitat during warm climatic phases, followed by adaptation and speciation during subsequent cooler phases.
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- Date Issued: 2009
Oceanic dispersal barriers, adaptation and larval retention: an interdisciplinary assessment of potential factors maintaining a phylogeographic break between sister lineages of an African prawn
- Authors: Teske, Peter R , Papadopoulos, Isabelle , Newman, Brent K , Dworschak, Peter C , McQuaid, Christopher D , Barker, Nigel P
- Date: 2008
- Language: English
- Type: Article
- Identifier: vital:6546 , http://hdl.handle.net/10962/d1006002 , http://dx.doi.org/10.1186/1471-2148-8-341
- Description: Background. Genetic breaks separating regional lineages of marine organisms with potentially high broadcasting abilities are generally attributed either to dispersal barriers such as currents or upwelling, or to behavioural strategies promoting self-recruitment. We investigated whether such patterns could potentially also be explained by adaptations to different environmental conditions by studying two morphologically distinguishable genetic lineages of the estuarine mudprawn Upogebia africana across a biogeographic disjunction in south-eastern Africa. The study area encompasses a transition between temperate and subtropical biotas, where the warm, southward-flowing Agulhas Current is deflected away from the coast, and its inshore edge is characterised by intermittent upwelling. To determine how this phylogeographic break is maintained, we estimated gene flow among populations in the region, tested for isolation by distance as an indication of larval retention, and reared larvae of the temperate and subtropical lineages at a range of different temperatures. Results. Of four populations sampled, the two northernmost exclusively included the subtropical lineage, a central population had a mixture of both lineages, and the southernmost estuary had only haplotypes of the temperate lineage. No evidence was found for isolation by distance, and gene flow was bidirectional and of similar magnitude among adjacent populations. In both lineages, the optimum temperature for larval development was at about 23°C, but a clear difference was found at lower temperatures. While larvae of the temperate lineage could complete development at temperatures as low as 12°C, those of the subtropical lineage did not complete development below 17°C. Conclusion. The results indicate that both southward dispersal of the subtropical lineage inshore of the Agulhas Current, and its establishment in the temperate province, may be limited primarily by low water temperatures. There is no evidence that the larvae of the temperate lineage would survive less well in the subtropical province than in their native habitat, and their exclusion from this region may be due to a combination of upwelling, short larval duration with limited dispersal potential near the coast, plus transport away from the coast of larvae that become entrained in the Agulhas Current. This study shows how methods from different fields of research (genetics, physiology, oceanography and morphology) can be combined to study phylogeographic patterns.
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- Date Issued: 2008
Climate change, genetics or human choice: why were the shells of mankind’s earliest ornament larger in the Pleistocene than in the Holocene?
- Authors: Teske, Peter R , Papadopoulos, Isabelle , McQuaid, Christopher D , Newman, Brent K , Barker, Nigel P
- Date: 2007
- Language: English
- Type: Article
- Identifier: vital:6952 , http://hdl.handle.net/10962/d1011984
- Description: The southern African tick shell, Nassarius kraussianus (Dunker, 1846), has been identified as being the earliest known ornamental object used by human beings. Shell beads dated from ~75,000 years ago (Pleistocene era) were found in a cave located on South Africa's south coast. Beads made from N. kraussianus shells have also been found in deposits in this region dating from the beginning of the Holocene era (<10,000 years ago). These younger shells were significantly smaller, a phenomenon that has been attributed to a change in human preference. We investigated two alternative hypotheses explaining the difference in shell size: a) N. kraussianus comprises at least two genetic lineages that differ in size; b) the difference in shell size is due to phenotypic plasticity and is a function of environmental conditions. To test these hypotheses, we first reconstructed the species' phylogeographic history, and second, we measured the shell sizes of extant individuals throughout South Africa. Although two genetic lineages were identified, the sharing of haplotypes between these suggests that there is no genetic basis for the size differences. Extant individuals from the cool temperate west coast had significantly larger shells than populations in the remainder of the country, suggesting that N. kraussianus grows to a larger size in colder water. The decrease in fossil shell size from Pleistocene to Holocene was likely due to increased temperatures as a result of climate change at the beginning of the present interglacial period. We hypothesise that the sizes of N. kraussianus fossil shells can therefore serve as indicators of the climatic conditions that were prevalent in a particular region at the time when they were deposited. Moreover, N. kraussianus could serve as a biomonitor to study the impacts of future climate change on coastal biota in southern Africa.
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- Date Issued: 2007
Implications of life history for genetic structure and migration rates of southern African coastal invertebrates: planktonic, abbreviated and direct development
- Authors: Teske, Peter R , Papadopoulos, Isabelle , Zardi, Gerardo I , McQuaid, Christopher D , Edkins, M T , Griffiths, C L , Barker, Nigel P
- Date: 2007
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/445447 , vital:74388 , https://doi.org/10.1007/s00227-007-0724-y
- Description: The amount of genetic structure in marine invertebrates is often thought to be negatively correlated with larval duration. However, larval retention may increase genetic structure in species with long-lived planktonic larvae, and rafting provides a means of dispersal for species that lack a larval dispersal phase. We compared genetic structure, demographic histories and levels of gene flow of regional lineages (in most cases defined by biogeographic region) of five southern African coastal invertebrates with three main types of larval development: (1) dispersal by long-lived planktonic larvae (mudprawn Upogebia africana and brown mussel Perna perna), (2) abbreviated larval development (crown crab Hymenosoma orbiculare) and (3) direct development (estuarine isopod Exosphaeroma hylecoetes and estuarine cumacean Iphinoe truncata). We hypothesized that H. orbiculare, having abbreviated larval development, would employ a strategy of larval retention, resulting in genetic structure comparable to that of the direct developers rather than the planktonic dispersers.
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- Date Issued: 2007
Morphological and genetic analyses suggest that southern African crown crabs, Hymenosoma orbiculare, represent five distinct species
- Authors: Edkins, M T , Teske, Peter R , Papadopoulos, Isabelle , Griffiths, C L
- Date: 2007
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/445701 , vital:74415 , https://www.jstor.org/stable/20107852
- Description: The crown crab, Hymenosoma orbiculare, occurs all along the coast of southern Africa displays great morphological variation across this range. To determine whether the species c several distinct taxonomic units, H. orbiculare were collected from 18 estuaries and lagoons Walvis Bay in Namibia and Kosi Bay in north-eastern South Africa. Open ocean individua also obtained from False Bay in south-western South Africa. Morphological and genet mitochondrial DNA) comparisons were carried out between individuals from all locatio monophyletic clusters were identified on the basis of genetic data, each confined to specific of the distribution range. Morphological data supported the distinctness of each of these clus typical H. orbiculare, characterized by large size (maximum carapace width 28 mm) and of the characteristic ornamentations of other morphotypes, occurred in estuaries and lag along the west and south coasts. False Bay deep-water individuals were of two forms.
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- Date Issued: 2007
Phylogeographic structure of Octopus vulgaris in South Africa revisited: identification of a second lineage near Durban harbor
- Authors: Teske, Peter R , Oosthuizen, A , Papadopoulos, Isabelle , Barker, Nigel P
- Date: 2007
- Language: English
- Type: Article
- Identifier: vital:6544 , http://hdl.handle.net/10962/d1006000
- Description: In a previous study that investigated genetic structure of Octopus vulgaris along the South African coast by sequencing the mitochondrial cytochrome oxidase III gene (COIII), all sequences generated were identical. Such a finding is unusual, because mitochondrial DNA mutates quickly, and several marine invertebrates present in southern Africa show considerable genetic variation and structure. We reanalysed the samples using two different mitochondrial markers, namely cytochrome oxidase I (COI) and the large ribosomal subunit (16S rRNA). Sequences of both these markers showed variation. The conclusion of the previous study, that South Africa’s O. vulgaris population is characterised by a lack of genetic structure along the coast, is rejected. Some specimens from Durban (southeast Africa) were genetically more different from those found in the remainder of the country than were specimens from other regions (Tristan da Cunha and Senegal). We suggest that the lineage in Durban may have been recently introduced.
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- Date Issued: 2007