Movement ecology of a West African sciaenid fish, Argyrosomus coronus, in southern Angola
- Authors: Parkinson, Matthew Cameron
- Date: 2023-10-13
- Subjects: Argyrosomus coronus Benguela Current Geographical distribution , Underwater acoustic telemetry , Fisheries Benguela Current , Fish populations , Spatio-temporal dynamics , Spatial ecology
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/432203 , vital:72851 , DOI 10.21504/10962/432203
- Description: Argyrosomus coronus is a large sciaenid species with a primary distribution between Cape Frio, in Namibia, and Luanda, in Angola, where it exists as a panmictic stock. Early juveniles (< 300 mm TL) occur on muddy offshore substrata (50–80 m deep) and at one year of age they recruit into the inshore zone. Adults are thought to predominantly occur inshore. Spawning occurs in the species during late spring. The species is heavily targeted by the recreational, subsistence, artisanal and commercial fisheries as juveniles through to adults and there are signs of population decline with declines in catch per unit effort (CPUE) and maximum size. A basic understanding of their movement ecology has emerged from previous studies, based on conventional tagging (mark-recapture) and CPUE monitoring from a shore-based recreational fishery. Juveniles were thought to be resident, with larger fish undertaking long distance migration southward in the austral summer and returning during the austral winter. In addition to the fishery-related threats faced by the species, the southern Angolan region has been identified to be an ocean warming hotspot, and this has been linked to a southward distribution shift and the recent hybridisation of A. coronus with its congener A. inodorus, in Namibia. This study aims to expand the knowledge of the movement ecology of A. coronus and to interrogate our current understanding of the movement patterns of the species using passive acoustic telemetry. Passive acoustic receivers were deployed at three study sites, Flamingo, where all tagging occurred, which lies ~ 200 km north of the Angolan border with Namibia, is a relatively exposed stretch of coastline; Tombua Bay, which lies 30 km south of Flamingo, is a small, sheltered natural embayment; and Baia dos Tigres, which lies 100 km south of Tombua Bay, is a sheltered lagoon in the lee of an island ~ 10 km from the mainland. Tagging occurred in two batches, one year apart. In the first batch, sub-adults (n = 3) and adults (n = 17) were tagged and monitored for two years. In the second batch, juveniles (n = 7) and sub-adults (n = 3) were tagged and monitored for one year. The first objective of this thesis (Chapter 3) was to examine the spatio-temporal dynamics of A. coronus at a regional-level (across study sites, to investigate the prevalence of the longshore migration), and at a local-level (within a study site), and to categorise the movement behaviour of juveniles, sub-adults and adults. Traditional seasons were not used in this thesis, as the study region alternates between ‘warm’ periods (up to ~ 26 °C mean daily water temperature), when Angola Current water covers the area, and ‘cold’ periods (down to ~ 15 °C mean daily water temperature), when Benguela Current water covers the area. A high degree of residency of tagged fish to the Flamingo study site, where tagging was conducted, was found, with juveniles and sub-adults never being detected outside of the Flamingo study site. Five adults (29 %) were detected haphazardly for between one and 36 days at Tombua Bay, following which they were typically detected again at the Flamingo study site. No fish were ever detected at the southernmost site, Baia dos Tigres, suggesting that none migrated to Namibia. Within the Flamingo study site, adults were found to group at the inshore mid-region of the study site during ‘cold’ periods, dispersing again during ‘warm’ periods, when there was a concomitant offshore shift in their area use. This explained the absence of the species from catches in the shore-based recreational fishery during ‘warm’ periods. These results challenge previous migration hypotheses for the species. Therefore, longshore return migrations which were evident from previously conducted conventional tagging, are probably not the norm for the species, but likely occur at a low frequency. The species exhibited a high degree of residency to their tagging site, despite the drastic seasonal changes in water temperatures and station-keeping was the dominant behaviour across all life stages. The constrained area-use noted in this study, relative to the known distribution of the species, suggests that A. coronus exists as a metapopulation, consisting of a network of subpopulations interconnected by gene flow that is most likely facilitated during their pelagic egg and larval phase. The second objective of this thesis was to examine the group formation observed at the Flamingo study site during ‘cold’ periods (Chapter 4). While this grouping of individuals was found to be correlated with water temperature, it was unlikely to be a causal relationship, as the water temperature was not dissimilar to adjacent areas. The area where individuals were concentrated is known to frequently attract large shoals of their dominant prey, Sardinella aurita. While the timing of this group formation aligns with a pre-spawning period, no studies have assessed the existence of local spawning. A. coronus were, however, likely utilising an abundant prey source, during the important pre-spawning period, in order to build up energy reserves. Group formation is a common feature of sciaenids, but literature on the subject is restricted to spawning congregations. Fish are not only more vulnerable to capture during these periods but may also be disturbed during these potentially important social periods. The third objective of this thesis was to investigate the presence of sociality in the species (Chapter 5). Evidence for sociality during and outside the seasonal group formation was explored using network analyses. There was evidence for sociality, with several groups, characterized by co-locations among individuals, identified. While these groups were fluid through time, there was evidence of persistent sociality, with two individuals in particular being consistently co-located over the entire study period. Due to the persistent nature of sociality, group foraging is suggested as an explanation for this, with anecdotal evidence of coordinated hunting supporting this. Acoustic telemetry vastly improved the knowledge of the movement ecology of A. coronus. Despite their panmictic population genetic structure, they were found to be largely resident, likely occurring as a metapopulation across their distribution, with egg and larval dispersal likely the primary mechanism for maintaining panmixia. Evidence for sociality was also found, which was previously unexplored in the species. The persistent nature of social groupings throughout the year, suggests that it may be linked with group foraging and is supported by anecdotal evidence of coordinated hunting by the species. While this study highlights the value of acoustic telemetry in studying movement ecology, it also shows the importance of drawing on multiple methods to fully understand a species’ spatial ecology, including mark-recapture, population genetics, and fishery catch and effort data. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2023
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- Date Issued: 2023-10-13
Coastal movements and estuarine use of sub-adult and adult leervis, lichia amia: results from long-term acoustic tracking
- Authors: Mxo, Rebecca Vuyolwethu
- Date: 2023-03-29
- Subjects: Lichia amia , Marine fishes Migration South Africa , Underwater acoustic telemetry , Marine fishes Behavior South Africa , Estuaries South Africa
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/422314 , vital:71930
- Description: Information on fish movement is important not only for understanding a species’ ecological importance, but also for developing appropriate conservation and management policies that are critical for food security and biodiversity preservation. This information is particularly important for species that occupy different habitats at different life history stages, and display predictable movement patterns, such as an annual spawning migration. Leervis Lichia amia is an estuary-dependent fishery species of high ecological and recreational importance in South Africa. There has been a steady decline in catch-per-unit-effort in the marine recreational fishery for this species over the past 20 years, and the most recent stock assessment classified the adult stock as collapsed. This study investigates L. amia multi-year coastal migrations and estuarine habitat use of sub-adult and adult fish tagged with long-life acoustic transmitters Seventy-eight L. amia (two juveniles, fifty-four subadults, and twenty-one adults) were tagged throughout their South African distribution and monitored between 2011 and 2020 producing a decade long dataset. Results show that regardless of the tagging region, clear migration patterns were observed, demonstrating that both sub-adult and adult L. amia migrate annually to KZN in the austral winter and predictably return to the WC and EC waters in the summer. The likelihood of partial migration was also identified, with the coexistence of migratory and resident behaviors within a single L. amia population. In addition, Overwintering behaviour was also observed with L. amia adults that remained resident throughout the year, foregoing the annual migration, phenomenon known as skipped spawning, and homing behaviour, where L. amia, particularly those tagged in the EC and WC, were recorded returning to previously occupied tagging locations and surrounding areas. The importance of estuaries to sub-adult and adult fish was also assessed and identified the importance of estuaries not only to subadults but also to adults. Estuary visits were strongly influenced by the environment which the fish was tagged in, temporal and seasonal changes, and life-history stages. The predictability of their migrations (almost to the day), the varied migratory behaviour (overwintering), returning to sites of familiarity post-migration, and long-term dependency on estuaries even as sub-adults and adults, provide motivation for increased protection of this species, including extending the network of estuarine protected areas in the country, and a closed fishing season, particularly during the annual winter migration. , Thesis (MSc) -- Faculty of Science, Ichthyology and Fisheries Science, 2023
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- Date Issued: 2023-03-29
Movement patterns of the iconic giant kingfish Caranx ignobilis from Southern Africa
- Authors: Dixon, Russell Bruce
- Date: 2022-10-14
- Subjects: Caranx Africa, Southern , Caranx Migration , Underwater acoustic telemetry , Carangidae Africa, Southern , Fish tagging
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/362797 , vital:65363
- Description: Giant kingfish Caranx ignobilis, the largest species in the family Carangidae, are global icons as apex marine predators. They are widespread in tropical to subtropical regions globally, where they are of high importance to ecosystems and fisheries. During summer, adults aggregate for spawning, making them vulnerable to overfishing. The world’s largest recorded C. ignobilis aggregation is in southern Mozambique. Some of these aggregating individuals (an unknown proportion) have been recorded passing into South African waters. Furthermore, a unique aggregation of adult C. ignobilis in South Africa’s Mtentu Estuary has attracted global attention but remains unexplained, hence warranting investigation. Research on C. ignobilis globally has shown relatively small home ranges. Research in southern Africa has been limited and inconclusive. Thus, the broad aim of this study is to describe the movement patterns of C. ignobilis from southern Africa. Long-term (36 years) mark-recapture data from the Oceanographic Research Institute’s Co-operative Fish Tagging Project, comprising 3 729 tagged C. ignobilis and 144 recaptures, were analysed. While 74% of recaptures were recorded < 1 km from the tagging location, long-distance movements of up to 419 km were also recorded (mean = 15 km). Although adults moved significantly (p < 0.01) greater distances than juveniles, they also displayed high levels of site fidelity. Seasonal trends included evidence of a summer migration; however, there was still considerable uncertainty regarding exact movements. Therefore, 43 C. ignobilis were acoustically tagged and subsequently monitored along the east coast for over five years with the Acoustic Tracking Array Platform’s passive receiver array. All acoustically tagged adult C. ignobilis migrated to southern Mozambique each year (with minor exceptions), from distances of up to 632 km. When not migrating, South African-based fish showed consistent inter-annual fidelity to individual home ranges. Although coastal home range length (excluding migrations) varied considerably between individuals, even the mean length (92 km) was greater than any previously recorded C. ignobilis home range, globally. In contrast to the southern Mozambique aggregation, the Mtentu Estuary aggregation seems to comprise of individuals showing fidelity to that region. The passive tracking of eight acoustically tagged individuals in the Mtentu Estuary revealed clear trends. Statistical modelling showed that estuarine presence was strongly associated with periods of cold coastal upwelling. Diel movement patterns showed that the utilisation of warm surface waters ~ 4 km upstream during the day was followed by nightly departures to the mouth or sea. Thus, it is likely that this majestic aggregation is for thermal refuge; specifically, for daily re-warming after feeding in cold waters at night. Findings from this study are of global ecological interest and have direct applications for local fisheries management and the development of sustainable eco-tourism. Protecting these vulnerable aggregations is of the utmost importance for the future of this species in southern Africa. , Thesis (MSc) -- Faculty of Science, Ichthyology and Fisheries Science, 2022
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- Date Issued: 2022-10-14
Using a multi-method approach to understand the movement patterns and the associated environmental correlates of an iconic West African recreational fish
- Authors: Winkler, Alexander Claus
- Date: 2019
- Subjects: Carangidae fishing , Carangidae -- Migration , Carangidae -- Namibia , Carangidae -- Angola , Fish tagging , Carangidae -- Benguela Current , Underwater acoustic telemetry , Ocean temperature -- Physiological effect , Fishes -- Effect of temperature on
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/76530 , vital:30597
- Description: The leerfish (Lichia amia), is a large, primarily coastal recreational fish species with a distribution extending from Portugal down the west coast of African to southern Mozambique. Owing to its large size (30 kg), strong fighting abilities and habit of taking surface artificial lures, this species has taken on an iconic stature among shore-based recreational anglers. Its reputation has made it an important angling tourism species that makes an important contribution to the economy of developing countries. For example, the species brought US$243 per harvested kilogramme into the local southern Angola economy. Despite its high value, little is known about its movement patterns in the northern Benguela coastal region, a region which includes southern Angola and northern Namibia. While much is known about the migratory patterns of the South African stock of L. amia, recent molecular studies have shown that the northern Benguela stock of L. amia has been isolated from the South African population for at least two million years, a consequence of the development of the cold Lüderitz upwelling cell in southern Namibia. Although the global population of L. amia is considered a single species, prominent biogeographic barriers within its distribution and subtle morphological differences between specimens captured within its tropical versus warm-temperate distribution suggest otherwise. A multi-method approach incorporating passive acoustic telemetry (PAT), recreational catch-per-unit-effort (CPUE) and conventional tagging (CT) in southern Angola, as well as recreational fisher-ecological knowledge (FEK) from Namibia, was used to investigate the large-scale movement patterns of L. amia within the northern Benguela coastal region. While each method had its own associated limitations, the combination provided a holistic picture of the population's seasonal migratory patterns. Furthermore, PAT successfully identified partial migration with 25% vs 75% of monitored fish exhibiting resident (movements < 100 km) or migratory (movements > 100 km) behaviour, respectively. Further behavioural diversity was observed with ‘resident’, ‘roaming’ and ‘embayment’ contingents identified based on varying levels of affinity to certain habitats. The presence of both resident and migratory individuals within the northernmost study during June and July, combined with available biological information, suggested that area-specific spawning may take place. While PAT, CPUE and CT largely aligned in determining area specific high-area use, results from network analyses and mixed effects models conducted on the PAT data supported the spawning hypothesis, with anomalous behaviour around specific receivers during the spawning season. All fish, regardless of behavioural contingent, displayed similar movement behaviour during the spawning season and this was driven by factors generally associated with reproduction, such as lunar illumination. Interestingly, these drivers were different from those that determined the area specific use of individuals outside of the spawning season. The environmental drivers of longshore migration into the northern study site were identified as a decline in water temperature and shorter day lengths. The results of this study highlight the importance of using a multi-method approach in determining migratory movement behaviour, area specific area use, and stock structure of key fisheries species. The identification of different behavioural contingents highlights the importance of acknowledging individual variation in movement and habitat-use patterns. This is particularly relevant as future climate change and spatiotemporal variation in fishing effort may artificially skew natural selection processes to favour certain behavioural groups. This study also highlighted the importance of scientists forming relationships with resource-users, such as recreational angling lodges in areas where limited research has been conducted. This is particularly relevant within the West African context where little is known about many of the fish species that are being increasingly targeted by tourism angling ventures.
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- Date Issued: 2019
The spatial ecology of Albula glossodonta in the St. Joseph Atoll, Seychelles
- Authors: Moxham, Emily Jeanne
- Date: 2018
- Subjects: Bonefish -- Seychelles -- Amirante Islands , Albula -- Seychelles -- Amirante Islands , Bonefish fisheries -- Seychelles -- Amirante Islands , Small-scale fisheries -- Seychelles -- Amirante Islands -- Economic conditions , Underwater acoustic telemetry , Bonefish -- Behavior -- Seychelles -- Amirante Islands , Bonefish -- Home range -- Seychelles -- Amirante Islands , Bonefish -- Conservation -- Seychelles -- Amirante Islands , Predation (Biology) -- Seychelles -- Amirante Islands , Bonefishing
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/57863 , vital:26997
- Description: Bonefish (Albula spp.) support valuable recreational and artisanal fisheries worldwide. Declining stocks have been reported at multiple localities, potentially jeopardising numerous multimillion-dollar industries. In particular, tourism generated through bonefish fly fishing contributes considerably to the economies of many isolated tropical islands and atolls. However, despite their economic value, little is known about bonefish in the Indian Ocean. This study aimed to contribute to the understanding of bonefish ecology in the Indian Ocean by (1) reviewing the bonefish literature to identify knowledge gaps; (2) evaluating the postrelease survival of acoustically tagged bonefish and; (3) quantifying the spatial and temporal movements of bonefish at a near-pristine and predator rich atoll in the Seychelles. A review of published literature on bonefish indicated that despite considerable biological and ecological research in the Pacific and Atlantic oceans, virtually no research has been conducted in the Indian Ocean. To help address this research gap, an acoustic telemetry study was initiated at the remote St. Joseph Atoll, within an existing array of 88 automated datalogging acoustic receivers. Thirty Albula glossodonta were surgically implanted with Vemco V13 acoustic transmitters in May 2015 and tracked for a period of one year. Only 10% of the tagged bonefish were detected for more than two weeks. A comparison of the final 100 hours of movement data from fish that were detected for less than two weeks to fish detected for longer periods revealed distinct differences. These included differences in area use patterns and significant differences in the average daily distance moved, speed of movement and residency index. This suggested that mortality in the form of post-release predation was high (90%) with tagged fish detected for less than two weeks being preyed upon by sharks. The three surviving bonefish were tracked for 210 to 367 days. These individuals remained in the atoll and showed high use of the marginal habitats between the shallow sand flats and the deeper lagoon. Water temperature, diel cycle and tide were significant predictors of bonefish presence in the lagoon. The high post-release predation of bonefish has implications for the management of this and other Albula species. Despite these fisheries being catch-and-release, bonefish fishing may be unsustainable due to the high post-release mortality, particularly in areas that are rich in predators. Therefore, protected areas or limitations on fishing effort need to be considered.
- Full Text:
- Date Issued: 2018
The associative behaviour of silky sharks, Carcharhinus falciformis, with floating objects in the open ocean
- Authors: Filmalter, John David
- Date: 2015
- Subjects: Silky shark , Silky shark -- Behavior , Silky shark -- Marking , Silky shark -- Food , Tuna fisheries -- Bycatches , Fish aggregation devices , Underwater acoustic telemetry , Fish tagging
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5381 , http://hdl.handle.net/10962/d1018177
- Description: The silky shark Carcharhinus falciformis forms the primary elasmobranch bycatch in tuna purse seine fisheries using fish aggregating devices (FADs) in all of the world’s tropical oceans. Its life-history traits of slow growth, late maturation and low fecundity make it vulnerable to over exploitation, as is apparent from historical bycatch trends. Very little is known about the associative behaviour of this species with floating objects, information which is essential in formulating effective mitigation and management measures. This study aims to address this knowledge gap through the use of various electronic tagging techniques in conjunction with dietary analysis. Dietary data were collected from 323 silky sharks incidentally caught at FADs. Approximately 40 percent of the diet consisted of prey associated with FADs while the remaining 60 percent were non-associated species of crustaceans, cephalopods and fishes. These results suggest that the associative behaviour is not primarily driven by trophic enhancement, but is likely a combination of predator avoidance, social interactions and feeding. Fine-scale behavioural data from silky sharks associated with drifting FADs were collected through the use of acoustic telemetry techniques. Acoustic tags were implanted into 38 silky sharks (69- 116 cm TL) at eight FADs. FADs were equipped with satellite linked acoustic receivers and abandoned to drift freely. Presence/absence and swimming depth data were telemetered via the Iridium satellite system. A total of 300 d of behavioural data were collected from 20 tagged individuals. Individuals remain associated with the same FAD for extended periods (min = 2.84 d, max = 30.60 d, mean = 15.69 d). Strong diel patterns were observed in both association and swimming depth. Typically individuals moved away from FADs after sunset and return later during the night, then remain closely associated until the following evening. Vertical behaviour also changed around sunset with sharks using fairly constant depths, within the upper 25 m, during the day and switching to rapid vertical movements during the night, with dives in excess of 250 m recoded. Broader scale movement behaviour was investigated using pop-up archival satellite tags (PSATs). Tags were deployed on 46 silky sharks (86-224.5 cm TL) for a total of 1495 d. Light data were used to calculate geolocation estimates and reconstruct the sharks’ trajectories. Movement patterns differed between animals and according to deployment duration. Several extensive horizontal movements were observed, with an average track length of 3240 km during an average tag deployment of 44.02 d. Horizontal movement patterns were found to correlate very closely with drift patterns of FADs. Consequently, it appears that the movement behaviour of juvenile silky sharks is strongly influenced by the movement of drifting FADs in this region. Ghost fishing of silky sharks through entanglement in FADs was also investigated using data derived from PSATs as well as underwater visual censuses. Thirteen per cent of the tagged sharks became entangled in FADs and entangled sharks were observed in 35 percent of the 51 FADs surveyed. Using this information in conjunction with estimated time that sharks remained entangled in the FAD (from depth data from PSATs), and scaling up according to estimates of FAD numbers, it was found that between 480 000 and 960 000 silky sharks are killed annually in this manner in the Indian Ocean. Subsequent management measures in this region prevent the deployment of FADs with netting that could lead to entanglement. Overall, floating objects appear to play a significant role in the juvenile life stages of silky sharks in this region. While their association with floating objects is clearly advantageous in an evolutionary sense, under current tuna fishery trends, this behaviour is certainly detrimental for the population.
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- Date Issued: 2015
Estuarine-dependency and multiple habitat use by dusky kob Argyrosomus Japonicus (Pisces: Sciaenidae)
- Authors: Childs, Amber-Robyn
- Date: 2013
- Subjects: Argyrosomus -- Habitat -- South Africa -- Algoa Bay , Argyrosomus -- Behavior -- South Africa -- Algoa Bay , Argyrosomus -- Migration -- South Africa -- Algoa Bay , Estuarine fishes -- South Africa -- Algoa Bay , Habitat selection -- South Africa -- Algoa Bay , Argyrosomus -- South Africa -- Sundays Estuary (Eastern Cape) , Underwater acoustic telemetry
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5386 , http://hdl.handle.net/10962/d1020241
- Description: Dusky kob Argyrosomus japonicus is a wide-ranging estuarine-dependent Sciaenid and an important fishery species throughout most of its distribution. It is one of South Africa’s most valuable coastal fishery species. High levels of juvenile exploitation in estuaries and ineffective management regulations have led to stock collapse, highlighting the need to better understand the spatial and temporal aspects of estuarine-dependency and multiple habitat use. Habitat connectivity is a critical property of estuarine-associated fishes and it therefore follows that knowledge of this link is fundamental in understanding population dynamics and the nursery role of estuarine and/or marine habitats. While dusky kob occur in both estuaries and nearshore coastal zones, limited information on connectivity among these habitats exists. The aim of this study is to assess the role of estuarine nursery habitats in the life cycle of the dusky kob by examining multiple habitat connectivity and determining the drivers associated with estuarine use. A total of 96 dusky kob (237–1280 mm total length) were tagged with acoustic transmitters in both the estuarine and marine environments of Algoa Bay, Eastern Cape, South Africa between May 2008 and September 2010. Their movements were monitored using a network of automated data-logging acoustic receivers deployed in the Sundays Estuary, seven neighbouring estuarine habitats, two commercial harbours and various sites within Algoa Bay. And more...
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- Date Issued: 2013