Estimation of a generalist meso-carnivore (black-backed jackal) population from a fenced protected area
- Authors: Davidson-Phillips, Samuel Ralph
- Date: 2024-04
- Subjects: Wildlife conservation , Carnivorous animals -- Conservation , Carnivorous animals -- Ecology
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/63698 , vital:73589
- Description: Since 2017, landowners, field guides, and management staff have reported large groups of black-backed jackals (Lupullela mesomelas) (here-forward jackal) in the Welgevonden Game Reserve, Limpopo, South Africa. This is linked with several observations of jackals predating on various ungulate species, potentially leading to unintended consequences on prey populations. These observations combined with an apparent poor survival rate of impala (Aepyceros melampus) and continuous declines in their number led to the perception that jackals could be partly responsible. Several studies have attempted to describe the ecological role of jackals within multiple environments, most of which have proven to be variable and context dependent. Human-modified landscapes along with the fencing of protected areas, may have manipulated the role of jackal within these scenarios. Jackals are wide-ranging and generally not confined by fencing, therefore their population trends possibly fluctuate within these anthropogenic landscapes. Re-introduced apex predators have been shown to facilitate food (provision of carrion) and simultaneously suppress jackal (active killing), this, however, remains difficult to predict. Jackals are classified as facultative cooperative hunters, and the term describes how they hunt in groups opportunistically when suitable resources of prey are available. The indication by several studies that jackals do actively predate rather than only scavenge, illustrates that the species has the potential to cause declines in an ungulate population. It therefore appears erroneous to exclude the species in terms of predator-prey relationships, particularly for land managers of fenced protected areas. The first step to any ecological management is the understanding of population size and trends over time. Unfortunately, little to no reliable methods exist to assess or monitor jackal populations. A popular tool for cryptic and wide-ranging terrestrial carnivores is Spatial Capture Recapture (SCR) models, typically through a camera trap array. These often rely on individual identities and an imperfect detection process to derive a statistical estimate of a given area. Jackals have been assumed to be individually unidentifiable and therefore these methods have largely been excluded. To address this a pilot-targeted camera-trap survey was conducted to improve capture and image quality. Following the role of this procedure, semi-automated software was applied to test the feasibility of individual identifications of captured images. This resulted in a subset of 58 right and left identifiable flank images, compiled from the highest graded images (n = 220) using the open-source Interactive Individual IdentificationSystem Beta Contour 3.0 (I3S Contour). I3S Contour assists users by distinguishing between unique contours on independent flanks without omitting observer effort and ranking. The effectiveness of the identification procedure was evaluated using three software tool trials, namely Computer-aided Annotation, Manual Contour Annotation, and Manual Contour Annotation (MA-2), where MA-2 included additional user-defined meta-data to images. Results showed that jackals could be individually identified from camera trap images and thus opened up the use of previously excluded SCR methodologies. Utilising the jackal database derived from the identification procedures described a total of 28 complete identifications (both flanks matched), 32 left-sided and 36 right-sided captures were used. These were derived from two independent survey periods split between seasonality (Winter & Spring). Two SCR methods were compared, namely, the Spatially Explicit Camera Recapture (SECR) and the newly developed Spatial Presence-Absence (SPA) modelling approach. SECR relies on full individual identification linked to spatial locations to derive spatial parameters to estimate population densities. The SECR methodology has been considered the most precise and was thus used as the benchmark. SPA relies on detections only (i.e., without individual identities), along with informative or uninformative priors. This must be across a spatial array that has detectors close enough to allow for simultaneous detections during each occasion (< 24 hours). Comparisons between these model outputs indicated a high degree of confidence interval overlap; however, SPA had a consistently higher posterior mode density estimate (63-64% higher), where the coefficient of variation between outputs also indicated the SPA having a closer relative precision. The targeted survey results for both model outputs for 2021 did not appear unusually high when compared to other studies. To assess the WGR population size over the long term, opportunistic by-catch data from a nine-year leopard (Panthera pardus) camera survey (Panthera organisation) was utilised. Model outputs from each of the years indicated that population estimates remained relatively stable. This was an unexpected result as the SPA densities did not follow the detection observations. This could be attributed to M not being set high enough (200) and the model reaching the limit, resulting in similar outputs between years. An alternative explanation is where the station spacing is larger than the diameter of the home range, which may reduce spatial correlation. , Thesis (MSc) -- Faculty of Science, School of Natural Resource Science & Management, 2024
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- Date Issued: 2024-04
The foraging ecology of Wedge-tailed Shearwaters (Ardenna Pacifica) in the tropical Western Indian Ocean
- Authors: Keys, Danielle Zuanda
- Date: 2018
- Subjects: Birds of prey -- Behavior -- South Africa -- Western Cape , Animal behavior , Wildlife conservation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/31251 , vital:31348
- Description: The distribution and abundance of prey largely influences how marine predators forage. Thus, understanding how marine predators respond to such changes becomes imperative when making decisions in marine spatial planning, especially in light of global climate change. Tropical marine systems are known for their relatively low productivity and high unpredictability of prey resources. Compared to higher latitudes, very few studies on seabirds have been implemented in the tropics. The Wedge-tailed Shearwater Ardenna pacifica is an Indo-Pacific tropical seabird with a wide distributional range. However, like many other seabirds, its population numbers are currently declining. Very little is known about the at-sea distribution of Wedge-tailed Shearwaters in the tropical western Indian Ocean. Therefore, this thesis investigates the foraging ecology of Wedge-tailed Shearwaters in the western Indian Ocean by tracking the fine scale movements of individuals at sea. This study was conducted in two different oceanic environments, namely D’Arros Island and Fouquet Island, St Joseph Atoll in the Amirantes Group in Seychelles archipelago as well as Réunion Island in the Mascarene archipelago during the Wedge-tailed Shearwaters breeding seasons. Here I aimed to investigate the foraging distribution of Wedge-tailed Shearwaters on Réunion Island in relation to different stages of the breeding period. I also compared the foraging ecology of all three populations, subjected to different abiotic and biotic factors. Furthermore, I investigated foraging site fidelity in individuals and repeatability within individual flight characteristics. To my knowledge, this is the first study to comprehensively investigate the foraging ecology of Wedge-tailed Shearwaters using global positioning system (GPS) loggers. This study demonstrated that the Wedge-tailed Shearwaters implement flexible foraging strategies throughout different stages of their breeding period and between different islands. In Réunion, during the shearwater breeding season, sexual segregation was prominent during early chick rearing and both sexes implemented dual foraging. As suggested by previous studies, it is likely that long trips were implemented for self-maintenance, whereas multiple short trips were implemented to meet the high energetic demands of the chicks. Several important foraging areas were identified for these Wedge-tailed Shearwaters. During incubation, shearwaters from Réunion faithfully foraged towards the south east of Madagascar near the East Madagascar Current and flew over large areas of the Mascarene Basin. During chick rearing, shearwaters significantly constricted their range closer to the colony and exploited deep waters on the south-west of Réunion Island. Shearwaters concentrated near oceanographic features such as the Pérouse Seamount (which is a known area of high productivity) as well as the Bourdonnais Ridge. There was no clear evidence for spatial or sexual segregation between individuals from the two study colonies in Seychelles during incubation and birds utilized a broader foraging range than birds from Réunion. This is likely to be the result of a large annual phytoplankton bloom which coincides with the shearwater breeding season in Seychelles, providing many foraging opportunities within the Seychelles Basin. The shearwaters from Seychelles exploited the Amirante Basin, East Somali Basin, and parts of the Seychelles archipelago. Shearwaters from D’Arros flew further east and foraged in the Mascarene Basin. Shearwaters from all populations foraged over deep, relatively unproductive waters with relatively high sea surface temperatures which are similar oceanographic features favoured by tuna. Foraging plasticity between individuals from different colonies was observed with varying flight bearings, flight durations and the maximum distances travelled from their respective colonies. Shearwaters displayed dissimilar levels of site fidelity, where shearwaters from Réunion faithfully foraged towards south east Madagascar, while shearwaters from Seychelles foraged over a wide range over the Seychelles Basin. Foraging effort for shearwaters from Fouquet was lower than shearwaters from Reunion and they spent less time at sea and foraged closer to their colony. These difference in behaviour responses between colonies may be advantageous to shearwaters, indicating that they may be able to respond to some level of environmental variability resulting from climate change and anthropogenic pressures. Lastly, during chick rearing, though shearwaters showed low levels of repeatability in flight characterising, foraging site fidelity was high amongst some of the individuals. Here we see that shearwaters continuously rely on permanent features, like seamounts and possibly fish aggregating devices, which are known to attract high abundances of tuna. Shearwaters may to some extent be relying on memory to find prey in a seemingly unpredictable environment. This study has helped us gain valuable insight about the foraging ecology of Wedge-tailed Shearwaters in the western Indian Ocean. Together with similar studies determining the at-sea behaviour of seabirds, better informed recommendations can be made to marine spatial planners as to where much needed pelagic marine protection should be implemented to preserve marine life in this fascinating part of the global ocean.
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- Date Issued: 2018
Changes in diet resource use by elephants, Loxodonta Africana, due to changes in resource availability in the Addo National Park
- Authors: Du Toit, Jana
- Date: 2015
- Subjects: Elephants -- Nutrition -- South Africa -- Eastern Cape , Elephants -- Habitat -- South Africa -- Eastern Cape , Wildlife conservation , Addo Elephant National Park (South Africa)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10731 , ISSN http://hdl.handle.net/10948/d1021194
- Description: Animals are restricted in their diets by several factors, most notably the availability and quality of resources. Variation in resource availability causes herbivores to shift their diets seasonally and spatially. Elephants (Loxodonta africana), are known to have extensive impacts on plant communities, altering ecosystem functioning and causing a decline in biodiversity. In enclosed areas, these impacts are increased leading to a decline in resource availability and presumably resource quality. In the Addo Elephant National Park, the Main Camp section has a history of high elephant impacts and therefore reduced resource availability. Whereas, the recently added Colchester section has greater resource availability, due to the absence of elephants in this section since the fencing of the Park. This study investigated the changes in diet (diet breadth, preference and diet quality) of elephants due to an increase in resource availability. Three alternative hypotheses were contrasted: 1) elephants as generalist foragers, 2) elephants as optimal foragers, or 3) elephants learning foraging behaviour. Using microhistological analysis, the diets of elephants were described over five sampling periods (August 2010 – February 2014) in both sections. Forage availability was estimated using a modified line-intercept method, and was used to determine changes in preference by relating forage availability to use. In the Colchester section the diet breadth of elephants increased, and was coupled with a high initial variation between the diets of elephants, which decreased in subsequent sampling periods. This supported the elephants learning foraging behaviour hypothesis. However, there was no increase in diet preference by elephants in the Colchester section, which supported the elephants as generalist foragers hypothesis. There was also no difference in the diet quality of elephants in the Main Camp and Colchester sections, which did not support any of the three hypotheses. The elephants learning foraging behaviour hypothesis is proposed to be the link between the alternate two hypotheses, and given enough time, either of the two could be supported. The lack of difference in preference and diet quality between elephants in the Main Camp and Colchester sections is hypothesised to be due to the population level (not measured for individuals) at which these were measured. Microhistological analysis of faeces was used to describe the diet of elephants, which was compared to the diet described by DNA metabarcoding. Microhistological analysis is a traditional, favoured technique used in describing the diet of wild herbivores, whereas DNA metabarcoding is a relatively new and untested technique. These two techniques have not yet been compared in the diet of megaherbivores. Results indicated that microhistological analysis identified significantly more grass in the diet of elephants, than DNA metabarcoding did, which was expected as previous studies also found overestimation of grasses. Microhistological analysis identified more plant families in the diet of elephants, than DNA metabarcoding. Most of the differences between the two techniques can be attributed to the difference in taxonomic resolution, which was due to the lack of a complete reference collection for DNA metabarcoding. Although either of the two techniques can be used to describe the diet of elephants, the most reliable results would be obtained when using both techniques. The findings of this study suggest that due to the high initial variation between the diets of elephants, with an increase in resource availability, the impacts will also initially be highly varied. This suggests that identifying plant species to monitor elephants impacts initially will be difficult. However, important plant species, or those known to be vulnerable to elephants impacts should be carefully monitored initially and monitoring should not only occur annually, but also seasonally.
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- Date Issued: 2015
The diet and ecological role of black-backed jackals, Canis Mesomelas, in two conservation areas in the Eastern Cape Province, South Africa
- Authors: Brassine, Mathilde Chloé
- Date: 2012
- Subjects: Black-backed jackal -- South Africa -- Eastern Cape , Jackals -- South Africa -- Eastern Cape , Jackals -- Food , Wildlife conservation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5660 , http://hdl.handle.net/10962/d1005344 , Black-backed jackal -- South Africa -- Eastern Cape , Jackals -- South Africa -- Eastern Cape , Jackals -- Food , Wildlife conservation
- Description: Mammalian predators are keystone species and can have disproportionately large impacts, relative to their abundance, on the communities and ecosystems they inhabit. In addition, predator-prey interactions (including bottom-up and top-down effects) are the fundamental linkage among species in food webs. Thus, understanding the food requirements of predators is imperative. There have been no comprehensive studies on the diet of black-backed jackals (Canis mesomelas) across a full seasonal cycle in the Albany Thicket Biome of the Eastern Cape Province. This biome is rich in plant diversity, is highly nutritious for herbivores and supports a large number of mammalian species, yet it is poorly conserved. The aim of the present study was to establish the diet of black-backed jackals on two conservation areas where thicket vegetation dominates (Great Fish River Reserve and Kwandwe Private Game Reserve). The diet was assessed using scats collected monthly from June 2009 to May 2010 and a sample of 25 stomachs over the same period. At both sites and across all seasons, mammalian hair was encountered most often (93% of all scats) and a total of 23 mammal species were consumed. Of the mammals recorded in the scats, hair from several ungulate species was encountered most frequently and these were mostly hider species (offspring hidden in tall vegetation just after birth). On a seasonal basis, the proportion of mammalian hair was lowest in autumn. However, the contribution of fruits (Carissa haematocarpa, Diospyros lycioides and Grewia robusta) to the diet was significantly higher during this season. This suggests that black-backed jackals may employ diet switching in the Eastern Cape as a mechanism to capitalise on seasonally abundant food sources. Based on the stomach content analysis, invertebrates were consumed as frequently as mammalian prey throughout the year but mammalian prey was recorded in greater quantity (i.e. volume and mass). Thus, scat analysis may have overestimated mammalian prey and fruits and underestimated the importance of invertebrates, particularly highly digestible species (e.g. termites). In spite of these differences, scat analysis demonstrated similar general and seasonal trends as the stomach content analysis. Thus, scat analysis can provide an efficient and relatively accurate source of information on the diet of blackbacked jackals in the Eastern Cape. Both stomach content and scat collection methods depicted the black-backed jackal as a generalist and opportunistic predator, mainly relying on mammals and invertebrates. Although the results of my study suggest that black-backed jackal may be important predators of certain ungulate species, further study on their prey preferences, actual biomass ingested and the effects on the population viability of prey species is required in order to develop a robust management plan for the species in the protected areas of the Eastern Cape.
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- Date Issued: 2012
The influence of genetic relatedness on sociality and demography of female African elephants
- Authors: Munishi, Linus Kasian
- Date: 2011
- Subjects: African elephant , Wildlife conservation , Elephants -- Africa
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: vital:10711 , http://hdl.handle.net/10948/d1011612 , African elephant , Wildlife conservation , Elephants -- Africa
- Description: Many elephant populations across Africa were or are being devastated by poaching and habitat loss, making population and range size for the species important issues of conservation concern in elephant ranging areas, including Tarangire National Park (TNP). Poaching and/or overhunting are known to have direct effects on the demography of elephant populations. The current understanding of the indirect effects of poaching on the sociality and demography of elephant populations is relatively poor, both at the group and an individual level. In this thesis the importance of genetic relatedness (as influenced by poaching) on sociality and demography of the female elephants was studied, using a combination of genetic, observation of behaviour and two decades of demography data collected from the northern subpopulation of TNP. I investigated and characterized the relatedness categories within elephant groups. Using a conceptual model for group size analysis in aggregation economies, I hypothesized that elephant populations subject to social disruptions due to poaching would exhibit characteristics of the free entry model, whereas more stable, closed populations would better fit the group-controlled model. I present a rare quantitative analysis of genetic relatedness and group size patterns among groups of adult female elephants in two wild populations: one in Tarangire National Park (TNP), Tanzania, and another in Addo Elephant National Park (AENP), South Africa. I demonstrate that the group size in African elephant populations is governed by genetic relatedness, and that poaching/overhunting has a significant influence upon the apparent group formation and size in elephants. I then focused on the effect of relatedness on agonistic interactions between adult females. I hypothesized that individual-based aggressive interactions among adult female African elephants would vary according to degree of kinship, with closely related dyads showing less aggression towards each other in resource-limited environments, thereby leading to indirect fitness benefits for individuals. As predicted, females did not show agonistic interactions to their close kin most often, and the frequency and intensity of aggressive interactions was inversely related to the degree of relatedness of the interactants. The effect of group relatedness and structure on reproductive success of individual female African elephant in TNP was also investigated. Adult female reproductive success was significantly influenced by within- group relatedness and structure. Higher reproductive success (with higher frequency of calf production and survival and more female calves produced) were more evident in the closely related groups than groups with low relatedness, suggesting that females from genetically disrupted groups are less likely to be reproductive than those in closely related groups. The possibility of negative effects of poaching on the subsequent generation of poached adult females and the alternative of a positive demographic response through reduced density was assessed by analysing the demographic patterns of the first generation (F1) females of prime-aged adult female African elephants in TNP using within- group relatedness and size. I also compared vital rate (age of first birth and interbirth interval) responses of first generation (F1) cows from Tarangire (poached) elephants with other females from poached (Northern Luangwa National Park, Zambia) and unpoached (Amboseli National Park, Kenya and Addo Elephant National Park, South Africa) populations. Group relatedness had no significant effect on sex ratio of the F1 cows‟ calves. There was a significant difference between the mean age of first birth and interbirth interval of F1 cows from the two (poached, Tarangire and unpoached, Amboseli National Park) elephant populations, suggesting that elephant populations reduced by poaching to low levels show an increase vigour through release from density constraints. Based on these results, the broader implications of secondary effects of poaching on elephant populations are critically evaluated. Also the importance of understanding the consequences of these effects is highlighted in light of other elephant conservation and management approaches. This understanding is useful in making conservation and management decisions for elephants and other biodiversity.
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- Date Issued: 2011